org.bdgenomics.adam.models

SequenceRecord

case class SequenceRecord(name: String, length: Long, url: Option[String], md5: Option[String], refseq: Option[String], genbank: Option[String], assembly: Option[String], species: Option[String], referenceIndex: Option[Int]) extends Serializable with Product

Utility class within the SequenceDictionary; represents unique reference name-to-id correspondence

Linear Supertypes
Product, Equals, Serializable, Serializable, AnyRef, Any
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Inherited
  1. SequenceRecord
  2. Product
  3. Equals
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Instance Constructors

  1. new SequenceRecord(name: String, length: Long, url: Option[String], md5: Option[String], refseq: Option[String], genbank: Option[String], assembly: Option[String], species: Option[String], referenceIndex: Option[Int])

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  4. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  5. val assembly: Option[String]

  6. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  7. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  8. def equals(o: Any): Boolean

    Definition Classes
    SequenceRecord → Equals → AnyRef → Any
  9. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  10. val genbank: Option[String]

  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  12. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  13. val length: Long

  14. val md5: Option[String]

  15. val name: String

  16. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  17. final def notify(): Unit

    Definition Classes
    AnyRef
  18. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  19. val referenceIndex: Option[Int]

  20. val refseq: Option[String]

  21. val species: Option[String]

  22. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  23. def toSAMSequenceRecord: SAMSequenceRecord

    Converts this sequence record into a SAM sequence record.

    Converts this sequence record into a SAM sequence record.

    returns

    A SAM formatted sequence record.

  24. def toString(): String

    Definition Classes
    SequenceRecord → AnyRef → Any
  25. val url: Option[String]

  26. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  27. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  28. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Product

Inherited from Equals

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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