org.bdgenomics.adam.rdd

ADAMContext

object ADAMContext extends Serializable

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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  6. implicit def convertBaseFeatureRDDToFeatureRDD(rdd: RDD[Feature]): FeatureRDDFunctions

  7. final def eq(arg0: AnyRef): Boolean

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  8. def equals(arg0: Any): Boolean

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  9. def finalize(): Unit

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  10. final def getClass(): Class[_]

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  11. def hashCode(): Int

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  12. implicit def intListToJavaIntegerList(list: List[Int]): List[Integer]

  13. final def isInstanceOf[T0]: Boolean

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  14. implicit def iterableToJavaCollection[A](i: Iterable[A]): Collection[A]

  15. implicit def javaListToList[A](list: List[A]): List[A]

  16. implicit def javaMapToMap[A, B](map: Map[A, B]): Map[A, B]

  17. implicit def javaSetToSet[A](set: Set[A]): Set[A]

  18. implicit def listToJavaList[A](list: List[A]): List[A]

  19. implicit def mapToJavaMap[A, B](map: Map[A, B]): Map[A, B]

  20. final def ne(arg0: AnyRef): Boolean

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  21. final def notify(): Unit

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  22. final def notifyAll(): Unit

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  23. implicit def rddToADAMGenotypeRDD(rdd: RDD[Genotype]): GenotypeRDDFunctions

  24. implicit def rddToADAMRDD[T](rdd: RDD[T])(implicit ev1: (T) ⇒ IndexedRecord, ev2: Manifest[T]): ADAMRDDFunctions[T]

  25. implicit def rddToADAMRecordRDD(rdd: RDD[AlignmentRecord]): AlignmentRecordRDDFunctions

  26. implicit def rddToContigFragmentRDD(rdd: RDD[NucleotideContigFragment]): NucleotideContigFragmentRDDFunctions

  27. implicit def rddToFragmentRDD(rdd: RDD[Fragment]): FragmentRDDFunctions

  28. implicit def rddToVariantContextRDD(rdd: RDD[VariantContext]): VariantContextRDDFunctions

  29. implicit def recordToRichRecord(record: AlignmentRecord): RichAlignmentRecord

  30. implicit def setToJavaSet[A](set: Set[A]): Set[A]

  31. implicit def sparkContextToADAMContext(sc: SparkContext): ADAMContext

  32. final def synchronized[T0](arg0: ⇒ T0): T0

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  33. def toString(): String

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  34. final def wait(): Unit

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  35. final def wait(arg0: Long, arg1: Int): Unit

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  36. final def wait(arg0: Long): Unit

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