org.bdgenomics.adam.projections

AlignmentRecordField

object AlignmentRecordField extends FieldEnumeration

This enumeration exist in order to reduce typo errors in the code. It needs to be kept in sync with any changes to Read.

This enumeration is necessary because Parquet needs the field string names for predicates and projections.

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
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Inherited
  1. AlignmentRecordField
  2. FieldEnumeration
  3. Enumeration
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
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Type Members

  1. class SchemaVal extends Val with FieldValue

    Definition Classes
    FieldEnumeration
  2. class Val extends Value with Serializable

    Attributes
    protected
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID()
  3. abstract class Value extends Ordered[Value] with Serializable

    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID()
  4. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

    Definition Classes
    Enumeration

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  4. final def SchemaValue: SchemaVal

    Attributes
    protected
    Definition Classes
    FieldEnumeration
  5. final def Value(i: Int, name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration
  6. final def Value(name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration
  7. final def Value(i: Int): Value

    Attributes
    protected
    Definition Classes
    Enumeration
  8. final def Value: Value

    Attributes
    protected
    Definition Classes
    Enumeration
  9. final def apply(x: Int): Value

    Definition Classes
    Enumeration
  10. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  11. val attributes: SchemaVal

  12. val cigar: SchemaVal

  13. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  14. val contig: SchemaVal

  15. val duplicateRead: SchemaVal

  16. val end: SchemaVal

  17. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  18. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  19. val failedVendorQualityChecks: SchemaVal

  20. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  21. val firstOfPair: SchemaVal

  22. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  23. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  24. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  25. val mapq: SchemaVal

  26. val mateAlignmentStart: SchemaVal

  27. val mateContig: SchemaVal

  28. val mateMapped: SchemaVal

  29. val mateNegativeStrand: SchemaVal

  30. final def maxId: Int

    Definition Classes
    Enumeration
  31. val mismatchingPositions: SchemaVal

  32. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  33. var nextId: Int

    Attributes
    protected
    Definition Classes
    Enumeration
  34. var nextName: Iterator[String]

    Attributes
    protected
    Definition Classes
    Enumeration
  35. final def notify(): Unit

    Definition Classes
    AnyRef
  36. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  37. val origQual: SchemaVal

  38. val primaryAlignment: SchemaVal

  39. val properPair: SchemaVal

  40. val qual: SchemaVal

  41. val readMapped: SchemaVal

  42. val readName: SchemaVal

  43. val readNegativeStrand: SchemaVal

  44. val readPaired: SchemaVal

  45. def readResolve(): AnyRef

    Attributes
    protected
    Definition Classes
    Enumeration
  46. val recordGroupDescription: SchemaVal

  47. val recordGroupFlowOrder: SchemaVal

  48. val recordGroupId: SchemaVal

  49. val recordGroupKeySequence: SchemaVal

  50. val recordGroupLibrary: SchemaVal

  51. val recordGroupName: SchemaVal

  52. val recordGroupPlatform: SchemaVal

  53. val recordGroupPlatformUnit: SchemaVal

  54. val recordGroupPredictedMedianInsertSize: SchemaVal

  55. val recordGroupRunDateEpoch: SchemaVal

  56. val recordGroupSample: SchemaVal

  57. val recordGroupSequencingCenter: SchemaVal

  58. val recordSchema: Schema

    Definition Classes
    FieldEnumeration
  59. val secondOfPair: SchemaVal

  60. val secondaryAlignment: SchemaVal

  61. val sequence: SchemaVal

  62. val start: SchemaVal

  63. val supplementaryAlignment: SchemaVal

  64. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  65. def toString(): String

    Definition Classes
    Enumeration → AnyRef → Any
  66. def values: ValueSet

    Definition Classes
    Enumeration
  67. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  68. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  69. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  70. final def withName(s: String): Value

    Definition Classes
    Enumeration

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped