org.bdgenomics.adam.models

IndelTable

object IndelTable extends Serializable

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  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. def apply(variants: RDD[Variant]): IndelTable

    Creates an indel table from an RDD containing known variants.

    Creates an indel table from an RDD containing known variants.

    variants

    RDD of variants.

    returns

    Returns a table with known indels populated.

  5. def apply(knownIndelsFile: String, sc: SparkContext): IndelTable

    Creates an indel table from a file containing known indels.

    Creates an indel table from a file containing known indels.

    knownIndelsFile

    Path to file with known indels.

    sc

    SparkContext to use for loading.

    returns

    Returns a table with the known indels populated.

  6. final def asInstanceOf[T0]: T0

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  7. def clone(): AnyRef

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  14. final def ne(arg0: AnyRef): Boolean

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