org.bdgenomics.adam.rdd.read.recalibration

CovariateKey

class CovariateKey extends Serializable

Represents a tuple containing a value for each covariate.

The values for mandatory covariates are stored in member fields and optional covariate values are in extras.

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  1. CovariateKey
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Instance Constructors

  1. new CovariateKey(readGroup: String, quality: QualityScore, extras: Seq[Option[Value]])

Value Members

  1. final def !=(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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    protected[java.lang]
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    @throws( ... )
  6. def containsNone: Boolean

  7. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  8. def equals(other: Any): Boolean

    Definition Classes
    CovariateKey → AnyRef → Any
  9. val extras: Seq[Option[Value]]

  10. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )
  11. final def getClass(): Class[_]

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    AnyRef → Any
  12. val hashCode: Int

    Definition Classes
    CovariateKey → AnyRef → Any
  13. final def isInstanceOf[T0]: Boolean

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    Any
  14. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  15. final def notify(): Unit

    Definition Classes
    AnyRef
  16. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  17. val quality: QualityScore

  18. val readGroup: String

  19. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
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  20. def toString(): String

    Definition Classes
    CovariateKey → AnyRef → Any
  21. final def wait(): Unit

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    @throws( ... )
  22. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )
  23. final def wait(arg0: Long): Unit

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