org.bdgenomics.adam.algorithms.smithwaterman

SmithWaterman

abstract class SmithWaterman extends Serializable

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Instance Constructors

  1. new SmithWaterman(xSequence: String, ySequence: String)

Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. lazy val cigarX: Cigar

  6. lazy val cigarY: Cigar

  7. def clone(): AnyRef

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    protected[java.lang]
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  8. final def eq(arg0: AnyRef): Boolean

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  9. def equals(arg0: Any): Boolean

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  10. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )
  11. final def getClass(): Class[_]

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  12. def hashCode(): Int

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  13. final def isInstanceOf[T0]: Boolean

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  14. lazy val moveMatrix: Array[Array[Char]]

  15. final def ne(arg0: AnyRef): Boolean

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  16. final def notify(): Unit

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  17. final def notifyAll(): Unit

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  18. lazy val scoringMatrix: Array[Array[Double]]

  19. final def synchronized[T0](arg0: ⇒ T0): T0

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  20. def toString(): String

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  21. final def wait(): Unit

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    @throws( ... )
  22. final def wait(arg0: Long, arg1: Int): Unit

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  23. final def wait(arg0: Long): Unit

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  24. lazy val xStart: Int

  25. lazy val yStart: Int

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